Protein modeling examples
CpIII_Fdx_docking_vid.mp4
Protein docking video
Protein docking video
Here, multiple protein conformations were calculated using AlphaFold, and a docking model of the protein-protein interactions was generated via AlphaFold-Multimer.
Protein-cofactor interactions
Protein-cofactor interactions
Here, FeS clusters were docked into two AlphaFold structures (purple and brown) in order to understand possible electron-transfer distances.
Inverse Folding
Inverse Folding
The native protein, PDB 3C8Y (pink), compared to the inverse-folded protein (blue) with 64.1% sequence identity.Â